1.
Getting Started
Logging in
Running a Simple HPC Job
The HPC Hardware Layout
HPC Training
2.
PBS
Get Info on Nodes & Queues
Running Array Jobs
qstat
qdel
Logging into Other Nodes
What Resources do my Jobs Need?
3.
General Software
Using a Later GCC
Using the Intel Compilers
Using MPI
Perl
Install Perlbrew
Install your own Perl Modules
Python
Install your own Python
Install Miniconda Python
Profiling Python
Julia
R
Matlab
Using Nextflow
Using Singularity
Software Collections
Checkpointing with DMTCP
Software List
4.
Specific Software
Blast
ddscat
FastQC
GROMACS
MIRA Version 3.4
Miscellaneous
QIIME 2
5.
GPU Computing
Accessing GPU Nodes
6.
Miscellaneous
Reproducible Research
Using SSHFS
7.
FAQ
Restoring Lost Files
Safe FTP/wget Usage
SSH Problems
Acknowledgments
8.
NCI
Announcements
HPC Autumn Training Session
Firewall Change - Dec 2017
User Forum - Tuesday 10 July 2018
More
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Updated 13 January 2020.
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