1.
Getting Started
Logging in
Running a Simple HPC Job
The HPC Hardware Layout
HPC Training
2.
PBS
Get Info on Nodes & Queues
Running Array Jobs
qstat
qdel
Logging into Other Nodes
What Resources do my Jobs Need?
PBS Manuals
3.
General Software
Using the Intel Compilers
Using MPI
Perl
Install Perlbrew
Install your own Perl Modules
Python
Install Miniconda Python
Profiling Python
Singularity
Playing with Singularity
Building Containers
Singularity & PBS
Definition Files
Important Information
References
Julia
R
Matlab
Nextflow
4.
Specific Software
Blast
ddscat
FastQC
GROMACS
MIRA Version 3.4
Miscellaneous
QIIME 2
5.
GPU Computing
Accessing GPU Nodes
Checking GPU Usage
6.
Miscellaneous
Reproducible Research
Using SSHFS
7.
FAQ
Restoring Lost Files
Safe FTP/wget Usage
SSH Problems
Acknowledgments
8.
NCI
Announcements
More
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