A quality control application for high throughput sequence data. Homepage: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Note: This is not installed on the Centos 8 nodes.
The binaries for the old Centos 6 nodes though can be found under /shared/opt/centos6/.
They may work using a Centos 6 singularity container.
Input file: galaxy_filter_by_quality_on_data_26M_solexa.fastq
Run:
$ /opt/FastQC/fastqc --noextract galaxy_filter_by_quality_on_data_26M_solexa.fastq
Started analysis of galaxy_filter_by_quality_on_data_26M_solexa.fastq
Approx 5% complete for galaxy_filter_by_quality_on_data_26M_solexa.fastq
Approx 10% complete for galaxy_filter_by_quality_on_data_26M_solexa.fastq
....
Approx 95% complete for galaxy_filter_by_quality_on_data_26M_solexa.fastq
Approx 100% complete for galaxy_filter_by_quality_on_data_26M_solexa.fastq
Analysis complete for galaxy_filter_by_quality_on_data_26M_solexa.fastq
$
Output file: galaxy_filter_by_quality_on_data_26M_solexa_fastqc.zip